| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bonaparte Coast | Sea/Bay/Gulf | native | 106854 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 106854 |
| Indian Ocean | Sea/Bay/Gulf | native | 8 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 10 |
| Malacca Strait | Sea/Bay/Gulf | native | 121464 |
| Manila Bay | Sea/Bay/Gulf | native | 10 |
| Pacific Ocean | Sea/Bay/Gulf | native | 8 |
| Panguil Bay | Sea/Bay/Gulf | native | 10 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 10 |
| Tayabas Bay | Sea/Bay/Gulf | native | 10 |
| Visayan Sea | Sea/Bay/Gulf | native | 10 |